Global expression profiling in leaves of free-growing aspen.
Identifieur interne : 003902 ( Main/Exploration ); précédent : 003901; suivant : 003903Global expression profiling in leaves of free-growing aspen.
Auteurs : Andreas Sjödin [Suède] ; Kirsten Wissel ; Max Bylesjö ; Johan Trygg ; Stefan JanssonSource :
- BMC plant biology [ 1471-2229 ] ; 2008.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (méthodes), Analyse en composantes principales (MeSH), Chlorophylle (métabolisme), Feuilles de plante (génétique), Populus (génétique), Régulation de l'expression des gènes végétaux (MeSH), Saisons (MeSH), Séquençage par oligonucléotides en batterie (méthodes), Température (MeSH).
- MESH :
- génétique : Feuilles de plante, Populus.
- métabolisme : Chlorophylle.
- méthodes : Analyse de profil d'expression de gènes, Séquençage par oligonucléotides en batterie.
- Analyse en composantes principales, Régulation de l'expression des gènes végétaux, Saisons, Température.
English descriptors
- KwdEn :
- MESH :
- chemical , metabolism : Chlorophyll.
- genetics : Plant Leaves, Populus.
- methods : Gene Expression Profiling, Oligonucleotide Array Sequence Analysis.
- Gene Expression Regulation, Plant, Principal Component Analysis, Seasons, Temperature.
Abstract
BACKGROUND
Genomic studies are routinely performed on young plants in controlled environments which is very different from natural conditions. In reality plants in temperate countries are exposed to large fluctuations in environmental conditions, in the case of perennials over several years. We have studied gene expression in leaves of a free-growing aspen (Populus tremula) throughout multiple growing seasons
RESULTS
We show that gene expression during the first month of leaf development was largely determined by a developmental program although leaf expansion, chlorophyll accumulation and the speed of progression through this program was regulated by the temperature. We were also able to define "transcriptional signatures" for four different substages of leaf development. In mature leaves, weather factors were important for gene regulation.
CONCLUSION
This study shows that multivariate methods together with high throughput transcriptional methods in the field can provide additional, novel information as to plant status under changing environmental conditions that is impossible to mimic in laboratory conditions. We have generated a dataset that could be used to e.g. identify marker genes for certain developmental stages or treatments, as well as to assess natural variation in gene expression.
DOI: 10.1186/1471-2229-8-61
PubMed: 18500984
PubMed Central: PMC2416451
Affiliations:
Links toward previous steps (curation, corpus...)
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aspen.</title><author><name sortKey="Sjodin, Andreas" sort="Sjodin, Andreas" uniqKey="Sjodin A" first="Andreas" last="Sjödin">Andreas Sjödin</name><affiliation wicri:level="1"><nlm:affiliation>Um eå Plant Science Centre, Department of Plant Physiology, Um eå University, SE-901 87 Um eå, Sweden. andreas.sjodin@plantphys.umu.se</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Um eå Plant Science Centre, Department of Plant Physiology, Um eå University, SE-901 87 Um eå</wicri:regionArea><wicri:noRegion>SE-901 87 Um eå</wicri:noRegion></affiliation></author><author><name sortKey="Wissel, Kirsten" sort="Wissel, Kirsten" uniqKey="Wissel K" first="Kirsten" last="Wissel">Kirsten Wissel</name></author><author><name sortKey="Bylesjo, Max" sort="Bylesjo, Max" uniqKey="Bylesjo M" first="Max" last="Bylesjö">Max Bylesjö</name></author><author><name sortKey="Trygg, Johan" sort="Trygg, Johan" uniqKey="Trygg J" first="Johan" last="Trygg">Johan Trygg</name></author><author><name sortKey="Jansson, Stefan" sort="Jansson, Stefan" uniqKey="Jansson S" first="Stefan" last="Jansson">Stefan Jansson</name></author></analytic><series><title level="j">BMC plant biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2008" type="published">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chlorophyll (metabolism)</term><term>Gene Expression Profiling (methods)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Oligonucleotide Array Sequence Analysis (methods)</term><term>Plant Leaves (genetics)</term><term>Populus (genetics)</term><term>Principal Component Analysis (MeSH)</term><term>Seasons (MeSH)</term><term>Temperature (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (méthodes)</term><term>Analyse en composantes principales (MeSH)</term><term>Chlorophylle (métabolisme)</term><term>Feuilles de plante (génétique)</term><term>Populus (génétique)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Saisons (MeSH)</term><term>Séquençage par oligonucléotides en batterie (méthodes)</term><term>Température (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Chlorophyll</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Feuilles de plante</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Gene Expression Profiling</term><term>Oligonucleotide Array Sequence Analysis</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Chlorophylle</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Séquençage par oligonucléotides en batterie</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Principal Component Analysis</term><term>Seasons</term><term>Temperature</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse en composantes principales</term><term>Régulation de l'expression des gènes végétaux</term><term>Saisons</term><term>Température</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Genomic studies are routinely performed on young plants in controlled environments which is very different from natural conditions. In reality plants in temperate countries are exposed to large fluctuations in environmental conditions, in the case of perennials over several years. We have studied gene expression in leaves of a free-growing aspen (Populus tremula) throughout multiple growing seasons</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>We show that gene expression during the first month of leaf development was largely determined by a developmental program although leaf expansion, chlorophyll accumulation and the speed of progression through this program was regulated by the temperature. We were also able to define "transcriptional signatures" for four different substages of leaf development. In mature leaves, weather factors were important for gene regulation.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSION</b></p><p>This study shows that multivariate methods together with high throughput transcriptional methods in the field can provide additional, novel information as to plant status under changing environmental conditions that is impossible to mimic in laboratory conditions. We have generated a dataset that could be used to e.g. identify marker genes for certain developmental stages or treatments, as well as to assess natural variation in gene expression.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">18500984</PMID><DateCompleted><Year>2008</Year><Month>09</Month><Day>29</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>27</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2229</ISSN><JournalIssue CitedMedium="Internet"><Volume>8</Volume><PubDate><Year>2008</Year><Month>May</Month><Day>23</Day></PubDate></JournalIssue><Title>BMC plant biology</Title><ISOAbbreviation>BMC Plant Biol</ISOAbbreviation></Journal><ArticleTitle>Global expression profiling in leaves of free-growing aspen.</ArticleTitle><Pagination><MedlinePgn>61</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2229-8-61</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Genomic studies are routinely performed on young plants in controlled environments which is very different from natural conditions. 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